NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10023007

Scaffold Ga0222714_10023007


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10023007 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4815
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000369Metagenome / Metatranscriptome1222Y
F002622Metagenome / Metatranscriptome542Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100230075F002622AGGAGGMNEEEANDERIAYYLQIGAISFEGMDENGEIIYAISETAKELAPELWQSHTEYVDRSLLELYEQGLVEIEYDENLQATMHISPEGQRIAREKGLIEMDFNPDIPND
Ga0222714_100230079F000369AGAAGMSEIELSDRFDRMNRVVEELLKGSTPTQIANITGIQRKEVLELIGDWKDVVHNDSNIRDRAREAISGADQHYAMLIKESWKTVEDADQSGQLGIKSGALKLIADIEAKRIGMLQSIGVLENNEIANQIAETERKQDILVKILKEVTSTCPKCKMDVAKRLSQITGVIESVPVEEADVV
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