NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10021307

Scaffold Ga0222714_10021307


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10021307 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5052
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002162Metagenome / Metatranscriptome588Y
F002357Metagenome / Metatranscriptome567Y
F037698Metagenome / Metatranscriptome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_100213073F037698AGGAGMCDSHDQGEHEINWTYQNQLREQWITDNPEAEYEGWMSI
Ga0222714_100213074F002162GGAMPNYDYMCDKEGTLIVLELPMDHKIPNCQVCYEPLRRVYTAVPAIFKGTGWAGKLG
Ga0222714_100213076F002357GGAGGMAFNLEDYEDVATLNKWFIANYPMGRSDISVISHDAEKGYILVQATLWRDATDPSPAVSNIAFGSRETYIPNMKKFYVEDTATSSLGRAIILLKGSDKTATKDDMKKVESNPSFKDKLESRQNMYGKPGTKSAQIETILRDSFAADKKEPEPVVWSVGDVVAEIGASTPNEPPACQHGHILKEGISKGGKPYYGYVCKAKQCEPKWAKLTANGKWYFEGGE
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