NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10020157

Scaffold Ga0222714_10020157


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10020157 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5237
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (14.29%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036007Metagenome171Y
F043374Metagenome156N
F073493Metagenome120Y
F080000Metagenome / Metatranscriptome115N

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1002015710F073493N/AMGRKELLRAKWTRIENGEEPDDYQNPFLSHFGFMDYPLDEYQERTRQKLKRYHGYE
Ga0222714_100201572F043374N/AMFPSDPTFNELHIREKQMLLGAILIWLNDCAHYSETTQEQNDIINKIIDLVEVDRILNYFIDYERSVNRFLGEARLENSKLKLENNEMKQTIDKLQKALDNAAENL
Ga0222714_100201574F080000N/AMPKIVSLQDTGRMWKEFHILDIAFDNNDNGNVLAKSTSPSYKVGDDVQYTKNERGGIKIQRDQSNFPTSNSNYTPKVSNSNQSEQIARSVVFKGAIDLVSSGKIQITDIPSFVDKYLPVVTGAAAQGASYEAHFQESSMPF
Ga0222714_100201577F036007N/AMTQDNKPSDKNKKSSSVFTNLTPTSLTDVAISLEVGKVPSLNTFYASKHWIVRKKAKDKFKAEFLEQLDQYDKIEFKSVAVTLETNLGYDIDNCIMAVKFGMDALKEWGGVKDDTKVYFPKLTIIYNPELEKNTAKIFFRGSLVE
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