| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10013942 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6632 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001018 | Metagenome / Metatranscriptome | 804 | Y |
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_1001394211 | F002738 | N/A | MSIDTYGLSTEQYEKFFEDNVRFAARLYLLSCNILSSEGVGNVDFKTALDMYQEAVYATNDDCRRYQKVNNPEAIKDNDIFGLTPSREELMEEIQSVNAKVEALVDYIGKLVETTTEGLTGLVD |
| Ga0222714_1001394214 | F002333 | N/A | NTMSIQAQTELNSAQALIYSRSNIGRAYPEFDDTAIAGIYLRGDHCIVVRHDGSEQSYDRTIIKTRFQTYTNRLKDFFSYLGPNYRGPSVWHNNAYILFKGWNYTHALGHLTSNAKLQAHWADKFIHVSDPVKVTTLLQSDQTDLGHLVAPDGLRLANRPIDLDSSLDDSSEQEPLLGEPYCSCGSFQRQLNNLSAFQEEIKGFKPWCIHLTWFNKYRELLCKRTDTRNASPSGTPEKCVAWWYAPPSDHVSDGRFVLLHTKSGAQAPLTHWRTYKPKEVFTQHDAWDLFFNMMEAGYTPFPGVSLPQLKAAVKKQ |
| Ga0222714_100139429 | F001018 | N/A | MSKITQTKLEDLNIIKLYEHYGALERSLPLLTPESQELAKAELECCANLRSEKIDRIYYALAAHEDALERIKKEGDLITQAKRHHESQLNQLKNLLSWLRRSLPLDSNRIQGRNYEFVLSKKKELTVEITSDPEFWHTEERSKYCIEQEVTTTKRIVVRSMSGEVLSDRTEPKTKTETLPNLDAIRNAYQNGEHIPSGVKVEQQYAIRKNRLFSTKRMEAQAPEYFGELLQESDSTN |
| ⦗Top⦘ |
 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |