| Basic Information | |
|---|---|
| Taxon OID | 3300021961 Open in IMG/M |
| Scaffold ID | Ga0222714_10009473 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_3D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8552 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (95.83%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (100.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 38.0516 | Long. (o) | -121.88 | Alt. (m) | Depth (m) | 13 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000263 | Metagenome / Metatranscriptome | 1424 | Y |
| F000450 | Metagenome / Metatranscriptome | 1126 | Y |
| F000852 | Metagenome / Metatranscriptome | 860 | Y |
| F007691 | Metagenome / Metatranscriptome | 346 | Y |
| F047059 | Metagenome / Metatranscriptome | 150 | Y |
| F085262 | Metagenome / Metatranscriptome | 111 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222714_1000947314 | F000450 | AGGCGG | MGDRANFGFVQSNGETIVLYGHWAGHNMLGRLADAVITARPRWTDESYATRIAISQLIGDQWNMETGWGLAVNSILDNEHKIAIVDWNQQTFSLHEEADFRDETNKVRGMKNEAIFTMDLSAFCEKYALDNILVV |
| Ga0222714_1000947316 | F007691 | AGG | MTAEQLIELIYEDNFGHVDFMDNMGGDCDCHIHTTLNTMAKYLGIEVDA |
| Ga0222714_1000947318 | F047059 | GGAGG | MTRSSRFMEYMKLHKISLEQDLEDARNNVPISEDEYFESDDYYLGAIEATAHLLSVATDIMKSSNERYE |
| Ga0222714_1000947320 | F000263 | GGAGG | MQAIPDYNVPAHLQRLIDAGVNGLDIMHGELKNLMFIAERDLDMAIKREEESEEAMDSMERTRCEGILDTLVDLYNLTYQLSFAIAERDKDESI |
| Ga0222714_1000947323 | F000852 | AGGA | MTTKREYLKAQGITVGVRGRFSGAAKQVLQEAEAKGIKFSAEKPEKTSK |
| Ga0222714_100094737 | F085262 | GGAGG | MSNLYTILAEMHPSGDFTESDLWEAIAESEGVDVYEIIDGDLTEYL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |