NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222714_10001271

Scaffold Ga0222714_10001271


Overview

Basic Information
Taxon OID3300021961 Open in IMG/M
Scaffold IDGa0222714_10001271 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_3D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28482
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (79.41%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0516Long. (o)-121.88Alt. (m)Depth (m)13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005294Metagenome405Y
F026015Metagenome / Metatranscriptome199Y
F032263Metagenome / Metatranscriptome180Y

Sequences

Protein IDFamilyRBSSequence
Ga0222714_1000127123F026015N/AMAPVGYSSVANQANTSDGFALGVGAQNVIGGTDYGLDVGDDGVVDTYGTLPPTTFYILDETTPGYVLQEDSSKIVLEQS
Ga0222714_100012714F005294GAGGMSVALIYDPRYHTFDSWAALMCELYAAQQLQIPTTDLDWKSWAAGLKAIDVFANEAIPEPYQFDDWQEWASAVVGAVNPRTN
Ga0222714_100012718F032263GAGGMKEVWEKPRPKSLGKPKSLSPNQKRAAKAFAKRSGTKYPSLVANMAGAKAKKGW
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