NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10131560

Scaffold Ga0222715_10131560


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10131560 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1575
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_101315603F016957N/AMSLSNYLKNSRNLSDVRTAISVNVGKSGEALFKELTGAIKSELADDKQHIDFYWGDKKVDVKGLKKMHHSGFILLEFINVWGGNGWCSKNSKAEFIAFQFPNQFYVFKKSDLRERALELCEEFNQDNVIRKNWIPYDDAKYKWVGRYNAQDVFTYLKISDVDDLIYDLLPYTIKE
Ga0222715_101315605F014505N/ASYDIASDIVQMVFLRLLELEQEGRTNFYEDDSLSFFYVYRSCINTALKYQRAKKRIHKVDIDDLENHSYETYPEERDAMEKLILMMEKEMEDMHWYDSKMIRIHMEGNSMNKIHRETDIGLTSIKNTIKNGKAKIYDQIKEDWEDYENGDYDKI
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