NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10019140

Scaffold Ga0222715_10019140


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10019140 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5167
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004722Metagenome426Y
F006109Metagenome381Y
F017824Metagenome238N
F051901Metagenome143N

Sequences

Protein IDFamilyRBSSequence
Ga0222715_1001914011F006109N/AMTRYAVMAGDRWVTAIYGPGKGIGVTRTKEDASSWSTYEQALAAAQSVAQCTHSFVAVHSVDEPTYSER
Ga0222715_1001914012F017824N/AMNQLQWELDRDRKLGEGVSRTSAENAKLFELQIWLPGQGAMRDLVRAESLQQAIEFAKNRYPNCRVDVPPTAAKKPKLARSTTSPSVVAKTRKKLADKK
Ga0222715_1001914013F051901GGAMSVPKVNFTKADAEMAKAAYLDELFYKDGRDQLSHPLHGTYTGLYQKYTLKN
Ga0222715_100191409F004722GGAMSRTGRDLVLAWLYREIRAAKTADLQRAAAFLEWARGIRKGCTKQRGGARVAQANAWRKDVDRDVRW
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