NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222715_10004189

Scaffold Ga0222715_10004189


Overview

Basic Information
Taxon OID3300021960 Open in IMG/M
Scaffold IDGa0222715_10004189 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_9D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12618
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.53%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)38.0566Long. (o)-122.185Alt. (m)Depth (m)29
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004461Metagenome / Metatranscriptome437Y
F008104Metagenome / Metatranscriptome339Y

Sequences

Protein IDFamilyRBSSequence
Ga0222715_100041891F008104N/AMGLIDNITDFFASVTNVQATESTVSTNELENSIVDLNGRYKLGHTLLGDYIKFGVNDDFPVILEKMLRQSPVHSGILTKKAKMIAGKDVEFGVDFLSTKKAQQELRVFMKNCAGANKGMYDVILHAAFQYESKGAAAFYIRWNRGKTKILELKSLDVKGVRAAEPNEKGDVTHYIVRR
Ga0222715_1000418915F004461N/AMSVSISNLPYGDRRPDLFIDSMVKSAAVLNRFRLIDGVKAKVNVPIFDAQLTWGNDLCQFDPQSTATISEKEMTVDTYKWAFLNCKTALESSYRGLLLKKGQHNPETMDAEFKDWVFDYFAKLSAERALQQASTEIIAELTADAAVIDYITGAPITALNILDFMEGAYASMSDVMLAAIYGDADRDFKPAFFLGTAAMQHYQIAIAEKFTTTPQGIIEGNIPPYFGMEVVHMASLPVDEFFVAAPQNLVMLTDDYNDVRAIDMKYEAELSSDKIWGQFKLGFSYLKGEEIVYAHQ
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