NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10029146

Scaffold Ga0222718_10029146


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10029146 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3712
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Kyanoviridae → Neritesvirus → Neritesvirus scam8(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020350Metagenome / Metatranscriptome224N
F031794Metagenome181N
F067533Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100291464F031794AGTAGMSPSKRQYRFCEVCGAKFRLASQQPHRRRRATCSCECQKKLIRINYRPWSDKELQVLKDMAETMPITQLVRAFNQQIGLHGYDKRTGHSIRSKLQKLGYSANVQHGVYTVGMISKKLNIPFGTVSNWVRYNGLNFYRITRKRNATKYITAKNLRDFARRRPHSFGGIPFIDLYLLLEDQQLTEYIVKNYPLRPARLQPQRVRCIETRKEYASYVEAGKAFHVCASAIYKSVKYGDSANQHHFEKVEDPSHLPRVQTHVNPRTKQQQSI
Ga0222718_100291465F020350N/AMTNASIGPIDLLTLKTNNRLLKPKHHVTTQQVRATLEELSHLLDKAVDHKDVDSLDVYSIINCIRLMARTPSDCFELHQ
Ga0222718_100291468F067533N/AMKTKDYYFHISNTGVRDFVTAYSFVDAKARVWRQYPDDQERIVWEDTTDPIPDAPTSRLF
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