NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222718_10025317

Scaffold Ga0222718_10025317


Overview

Basic Information
Taxon OID3300021958 Open in IMG/M
Scaffold IDGa0222718_10025317 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_27D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4047
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.6183Long. (o)-122.2916Alt. (m)Depth (m)12
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027538Metagenome194Y
F031708Metagenome / Metatranscriptome182N
F033998Metagenome / Metatranscriptome176Y

Sequences

Protein IDFamilyRBSSequence
Ga0222718_100253172F027538AGGMKDFWNKFTTRFAVPLLILTQMITLYDGWESRIEQRADRQQLIHCIKSHLHIVGEIHEVIDVDGNKMILDDTGFDGTVDERHLGSIGCREFAPGYEISEQFTTQRTMDRWLGKAFWTYKNTKDKVRAWYEYKFKTKMLEDIRG
Ga0222718_100253173F033998N/AMRRIYLILILLSILVLSISNIYLWKDRQQMWYQFNLHLMLDGSKGV
Ga0222718_100253175F031708GAGLISLLFCVSVHANDIYVEQAQEEPEETKVALETKTEVGNTYQQPVGGNTFEKSLIVPVSSEQYCSVVSGCYVQE
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