| Basic Information | |
|---|---|
| Taxon OID | 3300021958 Open in IMG/M |
| Scaffold ID | Ga0222718_10003789 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 12828 |
| Total Scaffold Genes | 31 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (16.13%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.6183 | Long. (o) | -122.2916 | Alt. (m) | Depth (m) | 12 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F010834 | Metagenome / Metatranscriptome | 298 | Y |
| F019312 | Metagenome / Metatranscriptome | 230 | N |
| F031655 | Metagenome / Metatranscriptome | 182 | Y |
| F031874 | Metagenome / Metatranscriptome | 181 | N |
| F039095 | Metagenome | 164 | N |
| F061808 | Metagenome | 131 | N |
| F063568 | Metagenome | 129 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222718_1000378910 | F010834 | N/A | MNELTLHLKLPKTISLNALYAGKHWTFRKKIKDEYKKIVEAELARYDHHIAESMSIHIRYNTRADVDNLVLVSKFTADTLVANGWITDDNPKHYHKLTITFDKSVEKNYCQVEIRLKLLQ |
| Ga0222718_1000378914 | F039095 | N/A | MDELKEEDYRWVRGGSKSIALLWLRQKNQDLMQIANALKPQDTSNEYEMDIFIDLISIYSAIDASIGMVEDVQQMVWAAEAKNADLKLTIRNLTRKINAYEERFDNLNEHLK |
| Ga0222718_1000378916 | F031655 | N/A | MNFAIDIAPLAGLLIGVNYWNSEMNDDFENPKYHSLQLCFGVFAIVITWATEREE |
| Ga0222718_1000378919 | F063568 | AGG | MENTKVSKLLLVYLWTQGHKVKEYKEAEGITTVHDTDEYKFDVSGNYGGFRVEYTHNRFSFYDGDKKLKDTDLNELR |
| Ga0222718_1000378922 | F019312 | N/A | MMTHSKAILQAQIIFEEALSDKECIDKLLHIDAQMYANTGEETSKAEMESIKRASAFIYRLIKGIDYDKGQRFIQAMGLTR |
| Ga0222718_1000378925 | F061808 | N/A | MNKFRVFVKDKFDVVFDTIEKARECRRALKQLKYTGIEIIITQEDIDPR |
| Ga0222718_100037893 | F031874 | N/A | MVKRCLSNLKEIFLYADSQPTEIMLGALNFILLLPATIIELGWIPLYQIYGMLVGGYQLFAVAHKNINMRKTASLLSFTVFSTTVTFYALEGYLNNSASHWGWVVLWLSSLSSVKRVHSEFWHRQWNNKE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |