NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10016198

Scaffold Ga0222717_10016198


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10016198 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5063
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (90.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005071Metagenome413Y
F024675Metagenome205N
F072524Metagenome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001619810F005071GGAGGMQLSTREKCTLRDLIKIEIKSLDVEDYGKYKYEEQKYCDFLISLGKKLKLTDQQKKKANKLYNR
Ga0222717_100161983F072524N/AMSVKMSIKGTALEYFNIKINNGFTVEDLAYLILGWEDSIDKIKKIKSYSKLMTIAKKQLLDKGLMFLECAWEHLDYIDNMEDVHRQVMQHIKDVEPTKYLGKTKDEIKQMQSEVA
Ga0222717_100161989F024675AGGAGMKKYNQYSLENHFKILEIQTGRKNPCDVMEFLEGEYYSNSKEKYIKYKDMDITHLIRVMLNASEDVDNNREEVIRLRVKLNKLTKIMED
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