NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10013617

Scaffold Ga0222717_10013617


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10013617 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5583
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (9.52%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001802Metagenome / Metatranscriptome632Y
F019252Metagenome / Metatranscriptome231Y
F059967Metagenome / Metatranscriptome133Y
F087890Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001361712F001802N/AMQTMKHLKKDYIQLGNLIYRPYKVCDLPQNFGCIEFNEKEGISEWFNYKGYTYIFETTTK
Ga0222717_100136175F019252AGCAGMKLIDQVKPEVLDALAESKCEFSSSYRRIILSLESVNRYKQLTIDEIQTLICFLPDEFKPQGDIDMFYGDNILQEKYKL
Ga0222717_100136176F059967N/AMTKEELEQKIQMLEQKVVSNTSEMVSVQADLKIAQKQLEDINKPEITPLQFDLIQEAIERGVDEFNFDDDANYDKEFGINYDGKVHLESLDLTCTYELVEMITEKVHKLFTEAECPEEDDNSELNTQTVAEKVI
Ga0222717_100136178F087890N/AMKKFLKDKSGPIMMGIGAILLVSDLMGVEGIITFAVGIILMVEGVDRM
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