NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10011690

Scaffold Ga0222717_10011690


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10011690 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6067
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (64.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002747Metagenome / Metatranscriptome533Y
F003154Metagenome / Metatranscriptome504Y
F103294Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1001169013F103294AGGMTFAGWVMIAFWLGFLLYGVVAWALNKSFEQLQDIEMKLDEQDKDNII
Ga0222717_100116902F002747GGAGMAKDQRYFVDVCLEIYVPDQGCGDKALTNESKDANWFANEITSQLPRLVNKQFEFSERPYSVGDASFVKQQRG
Ga0222717_100116906F003154AGGAGMDTLSYAMNIFNGTYTDERGWKHYRVNGKSYDIRMHPMTLEWACNCPAYKFGRGKQCKHIKEIQEKA
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Institute for Fundamental Biomedical Research
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