NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10003454

Scaffold Ga0222717_10003454


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10003454 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11869
Total Scaffold Genes33 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (15.15%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045376Metagenome / Metatranscriptome153N
F084731Metagenome112Y
F103897Metagenome101N
F105933Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000345419F084731N/AMNRFPKLTREAYGSTLMDGGYTLWQDEETRLKGYVVGGVCTEADCLAEATTRFAELFDIYLHKLDVRNEYRTLGIGTWVDEGRIYFDIVEYVENEQDAVALCVERGEKAYFDILAQKSIYIKDEK
Ga0222717_1000345421F105933N/AMENIKTSALAHDLRIQAAKQLFDGLTFSQATNTAEWDALTCDEQMTIEDLIG
Ga0222717_100034544F045376GAGMNYTNTQIEAMYLDWFNNFLSCDAWRQHYNLCIAEGENILDIGRQLNEIRKHD
Ga0222717_100034546F103897N/AMNKETLEGIPNTEVSTQAISVVRENLPEWFRENLWLVIQTCIDHEDWSKRLVEVQRTNLLFTNDIVHDIMGLLNKDEHFLPRI
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