NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10002364

Scaffold Ga0222717_10002364


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10002364 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14655
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (5.41%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007772Metagenome / Metatranscriptome345Y
F008577Metagenome / Metatranscriptome331Y
F021302Metagenome / Metatranscriptome219Y
F023446Metagenome / Metatranscriptome210Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000236410F023446N/AMSKNVQFIDDLCELMGGDRFFLCDQYCQDDLFEMQDRIAKHIANSANDGLGLAKFMVSKFPSTFTTE
Ga0222717_1000236414F008577N/AMNLTWDETKEIANRLDEIIGNNFHDAMYNVIWQRESDEEVEVSDEDILAIKEQLKRIL
Ga0222717_1000236434F021302N/AMRTLIRKLKKNRRKVKHVKFLENRILLLHNEIVTASFKGEYSYNKNITVLYGNIENKAKLLRKYNRRLKILIY
Ga0222717_100023648F007772N/AMSTQSTDLLKISYNLFDKHYTKLTDEQRSKVWDIYYDFY
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