NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000654

Scaffold Ga0222717_10000654


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000654 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)29497
Total Scaffold Genes44 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (72.73%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016668Metagenome / Metatranscriptome245Y
F061270Metagenome / Metatranscriptome132N
F088898Metagenome / Metatranscriptome109N

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000065424F088898GGCGGMTTTTKPYYILFVYNNDTQTWIDEFGDYTKASLKTEIEFSHYDTKKKYIKIVKTTDDANAITNAYKNLEKEIA
Ga0222717_1000065433F061270AGAAGGMGNRATIEVVGDKLAGDKAPCYIYVHWSGSPDTVKQFVNNAAPVMRKTDVNYSTARLITEICNYVEGGLSVGVYPATENNKEAWDNGHYVVDISNGNIKNDDKLVADGIKFGEF
Ga0222717_1000065444F016668AGGMIPVSMLRVLLTKEGLEFKIVKVVGNVAQVNIIVAEGSDVHS
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