| Basic Information | |
|---|---|
| Taxon OID | 3300021957 Open in IMG/M |
| Scaffold ID | Ga0222717_10000643 Open in IMG/M |
| Source Dataset Name | Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 29844 |
| Total Scaffold Genes | 59 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 45 (76.27%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: California | |||||||
| Coordinates | Lat. (o) | 37.0966 | Long. (o) | -122.4216 | Alt. (m) | Depth (m) | 38 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F042623 | Metagenome / Metatranscriptome | 158 | N |
| F051535 | Metagenome / Metatranscriptome | 144 | N |
| F066691 | Metagenome / Metatranscriptome | 126 | N |
| F096208 | Metagenome / Metatranscriptome | 105 | N |
| F098202 | Metagenome | 104 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0222717_1000064317 | F042623 | N/A | MELIEEYTRVIKIEEGYPHAKTLHLPTGKIDAVVDWCKQELSPGWKWQILTSSSTNTPGAYAFFFSNDADFFAFILKYG |
| Ga0222717_1000064321 | F098202 | N/A | MPYVQNEIPKLTITDQVMVFITTMFLFIHVKQLIASGPAFILNALLGIWISITIFDMYARWRQKQQ |
| Ga0222717_1000064329 | F051535 | AGGA | MKIDFYLKWIATATLVVGSFINSAFPELYPIGPVVLIAGGVVWLIVSCMWREWSLIITNSVMTLVAVAGMAYYYLS |
| Ga0222717_1000064339 | F066691 | GGAG | MYKLFLIGIIATLIGCGTSNRATADWFNELLKPSPAGVLTGILQLSKPKPTETINYNHGKTIGQIYRQEQQNNQYHDGQVDTVLSQFPHRAFDVLTNPVRLSVRNRQVVADIGFVVRWNQNYLRQLDSILRNASDSRAATHWATLYTEEHWGAGHSSFQFDRIRGEKVLFGLVRPGPQLQVTLNGRNLGCWDIPELSGRTQSNRQAQKKMVHPMGNGVKINGWLELRSRISLVVSPEDADRIGQARISVVNQRQCR |
| Ga0222717_1000064354 | F096208 | AGTAGG | VKYLLSKVSDNLQFRFFDRFQTATAKYHCSKPTVDNFLFVNIPKCATQTIAAWAAQMATRDGKIDFPYTFTILREPYGRLKSAFAYGTSAKYQYKFTVEDIGNWFLGKQLPKEFTPNQVDLLVHFVPQHVFIKNAPINIDNWFSTGDMRQLRHILSALSGIDIKWMQENTSRYTTQFTIEYNKWFAQNKTYIENYIEEDYELYRRRF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |