NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0222717_10000546

Scaffold Ga0222717_10000546


Overview

Basic Information
Taxon OID3300021957 Open in IMG/M
Scaffold IDGa0222717_10000546 Open in IMG/M
Source Dataset NameEstuarine water microbial communities from San Francisco Bay, California, United States - C33_18D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)32134
Total Scaffold Genes43 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)40 (93.02%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water → Estuarine Microbial Communities From The San Francisco Bay-Delta (Sfbd), California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)37.0966Long. (o)-122.4216Alt. (m)Depth (m)38
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000200Metagenome / Metatranscriptome1633Y
F001655Metagenome / Metatranscriptome656Y
F003225Metagenome / Metatranscriptome499Y
F016901Metagenome244Y

Sequences

Protein IDFamilyRBSSequence
Ga0222717_1000054620F016901AGGAGGMHMIGIHTTYIIELYDDVWSQVWSIDCIEQAKHYVHTKRDNGKRYRIVKHTTEVL
Ga0222717_1000054621F001655AGGAGMKQPENDHTKMFGNDGPIGNDAEIVVYYEQHGPAEPVLRIPFWYYREELGMHEHFEASVHRTAKALKESYTYWPEGYVHVQTIINDEYVNMI
Ga0222717_1000054639F003225GAGGMTPELETYFNNYNELFNHEGFKQLVNELSTNAQQLADIQTVKDLEDLHFRKGQVAAFATVINLQGTIEAARDQAEAEDEDPIDV
Ga0222717_1000054640F000200N/AMYKIYDFRCTNGHVFEEFVVSGVTTSRCGCGANATKMVSAPSFHLNGSDGSFPGASIKWTREHEKAGSK
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