NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213921_1005513

Scaffold Ga0213921_1005513


Overview

Basic Information
Taxon OID3300021952 Open in IMG/M
Scaffold IDGa0213921_1005513 Open in IMG/M
Source Dataset NameFreshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2561
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)33.9266Long. (o)-83.4611Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001018Metagenome / Metatranscriptome804Y
F022857Metagenome212Y
F053230Metagenome141Y
F073444Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0213921_10055132F022857N/AMETIAVPRLTVSFAVDLEVEYNAFEGKTPQDVAIALQDELDDLLFETSPTVKGVFTSITAIDSNG
Ga0213921_10055134F073444N/AMDCHQHAVTDFNLQLEMNDLEYEMLKDNGEVLPYNTAKADDLEQKKLKLFFGKRFHQNAANAYWYWLVKTQNKYDYN
Ga0213921_10055135F001018N/AMTQITQTKIKDLNVLQLYEHYGALERSLPLLTPESQELAKAELETCSRLRSEKIDRIYYAMAAHEDALERIKKEGELIAQAKRHHESQLNSLKGLLNWLRRALPLDSNKITGRNYQFVLVKKKSLTVEIKSDPEDWDTDQRQSYCVEEEVTTTKRVVLRSLSGDLLEERVEPTTKTKIVPNLDAIRSAHQAGEGLPAGVKVLQEYSIRSKRIYGNDSSMELEASQYPGQLLPED
Ga0213921_10055136F053230N/AMFEAIFSVVLPIVKDFLMTAAAALLAYGLNKLQSYFQTI
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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