| Basic Information | |
|---|---|
| Taxon OID | 3300021952 Open in IMG/M |
| Scaffold ID | Ga0213921_1000328 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 16841 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 23 (82.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000763 | Metagenome / Metatranscriptome | 901 | Y |
| F009401 | Metagenome / Metatranscriptome | 318 | Y |
| F025974 | Metagenome / Metatranscriptome | 199 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213921_100032811 | F000763 | AGGTGG | MNMKNPAILTAGAFLSAWAASNFDIDYRAVLWAVLAGVFGYATPKK |
| Ga0213921_100032813 | F025974 | GGAG | MPNPTRIEINCETGVESIIELTDAEVAELAYQAELAAEKKAEEESAKAELEAKKQEVLAKLGLTADEVTALLA |
| Ga0213921_100032821 | F009401 | AGG | MAKLRVTTQDGQVNDYEITPVIEYQFEQYAKKGFHKALIEDSKQSDIYWLCWEAMRRAGVSPKPFGEGFLETLKLVEVLESDPLE |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |