| Basic Information | |
|---|---|
| Taxon OID | 3300021952 Open in IMG/M |
| Scaffold ID | Ga0213921_1000089 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 34945 |
| Total Scaffold Genes | 58 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 49 (84.48%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007166 | Metagenome / Metatranscriptome | 356 | Y |
| F007848 | Metagenome | 343 | Y |
| F017287 | Metagenome | 241 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213921_100008930 | F017287 | AGG | MEDYIRRVFEGEAPCDKCDQAQSCKENELACRAFSFYVRRGTFEEHTVRMPTHHLFTLIFRDDDTALKNYLKALQAKGNQNALFE |
| Ga0213921_100008935 | F007166 | GGAG | MDEMAQVMQEMEQRLEEALDNMEYGTELSQDDVDVIRAACGKPNNKRNNLLQSVFDDFGTVFGGSL |
| Ga0213921_100008937 | F007848 | GGA | MKDFIGSCLLGALLGCLFAYGVPAKAQTVQLTDSQGYSGGTVQINGNTAQFVNPQGITTQTATLYPNQVVINNPGISNQAIVIGQPSYFVPPSPPTPASPRVLQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |