| Basic Information | |
|---|---|
| Taxon OID | 3300021952 Open in IMG/M |
| Scaffold ID | Ga0213921_1000088 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from McNutts Creek, Athens, Georgia, United States - 20-17 MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 35039 |
| Total Scaffold Genes | 60 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 47 (78.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Creek → Unclassified → Freshwater → Freshwater Microbial Communities From Mcnutts Creek, Athens, Georgia, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Georgia | |||||||
| Coordinates | Lat. (o) | 33.9266 | Long. (o) | -83.4611 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007166 | Metagenome / Metatranscriptome | 356 | Y |
| F007848 | Metagenome | 343 | Y |
| F012854 | Metagenome / Metatranscriptome | 276 | Y |
| F014955 | Metagenome | 258 | Y |
| F029048 | Metagenome / Metatranscriptome | 189 | Y |
| F035159 | Metagenome | 172 | Y |
| F086796 | Metagenome | 110 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0213921_100008818 | F029048 | AGGAGG | MLSHIKDVIGDKARVSTEPFGVDEERQLIAFEVNDLAAVIQDVIRTCADCCIDPQSREAVLELLT |
| Ga0213921_100008821 | F007166 | GGA | MSELNQLMLEMEERLEEALDNMEYGTDLSQDDVDVIRAACGKPNNKRNDLLQSVFNDFGTIFGGNHATK |
| Ga0213921_100008824 | F007848 | GGA | MKDFIGSCLLGALIGCMFAYGVPAKAQTYPMTNSQGYQVGTVQINGNTAQFVNPMGVTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSLPTPQSPRVLQ |
| Ga0213921_100008828 | F014955 | GGA | MLEKYIVAATGFGYLIVGILQFTKGSISNALIWIGYAAAQIGLWMNLK |
| Ga0213921_100008831 | F086796 | N/A | MTDYSENYLKIQRLLKAYHNATLKGNFEKATKLAHDLADETIQLEIASIRQLKNQWLS |
| Ga0213921_100008846 | F035159 | N/A | VFQTAFQPSAFQNDAFQIVITPVNPKQGGDDASWTPEERKRYKALQKKLRQAEAKRIEALKLDAEKRKQIITDLVDPKPVVQKQQNKVQSNQEVSADIPSQLAAIDRYIANLVKQQQDLQTAVAMRAAKLRLEQEIAILEAKRQAELDDEEALLALIL |
| Ga0213921_10000885 | F012854 | GGAG | MINIAQAIHQLYPQVVRTEDNVAYDAEGNEVIYDLKAVTEKAEANAKSQEASKASALAKLSALGLTQDEIKALVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |