NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0226832_10005961

Scaffold Ga0226832_10005961


Overview

Basic Information
Taxon OID3300021791 Open in IMG/M
Scaffold IDGa0226832_10005961 Open in IMG/M
Source Dataset NameHydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Daikoku_FS921 150_kmer
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterMarine Biological Laboratory
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3841
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Aestuariivita → unclassified Aestuariivita → Aestuariivita sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids → Characterization Of Microbial Community From Mariana Back Arc

Source Dataset Sampling Location
Location NameDaikoku vent field, Mariana back arc basin
CoordinatesLat. (o)21.3250983Long. (o)144.19162955Alt. (m)Depth (m)409.13
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049696Metagenome / Metatranscriptome146N
F049924Metagenome / Metatranscriptome146N

Sequences

Protein IDFamilyRBSSequence
Ga0226832_100059611F049924GAGMRKYATQKLIAKDVPVHLKGLFEGQNLRFRGRGSRVKAVETVLKSKKLREKYLWEGWKEMPLPKVMKGLTYRFNQDLPLEFADRMSVYCR
Ga0226832_100059615F049696GGAGMSGIELKPMKIHTQKGKRRLWLEQQRYGLDGFKPGSKFKVTYHADSIEIESDPEGSNKVFTRVKKASKQHPEERRFAIVSLHNSKLKAIFGDTEDGTDTPCRYEQMPGYLKIWPVDRVAEFANELAEGIEQQLAA
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