NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194053_10138356

Scaffold Ga0194053_10138356


Overview

Basic Information
Taxon OID3300021520 Open in IMG/M
Scaffold IDGa0194053_10138356 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Sep2016-L227-8m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)997
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.688Long. (o)-93.689Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F052598Metagenome142N
F054041Metagenome / Metatranscriptome140Y

Sequences

Protein IDFamilyRBSSequence
Ga0194053_101383562F054041GAGGMTTIFTCGHKAKDNEDGWTISTKAYTRENNRAVDYRTVCNNCYVVYEMEELVLFGEADVAKWLDGE
Ga0194053_101383563F052598GGCGGMFLQGLRVKPMIPLFKLTVTDEFHEKYVFESEDKEEILDRVALWLGQLDSTPIYDLHIEVNK

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