Scaffold Ga0194048_10119398

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0194048_10119398

Scaffold Ga0194048_10119398

Overview

Basic Information
Taxon OID	3300021519 Open in IMG/M
Scaffold ID	Ga0194048_10119398 Open in IMG/M
Source Dataset Name	Anoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1005
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location Name	Canada: Ontario
Coordinates	Lat. (^o)	49.697	Long. (^o)	-93.722	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F019099	Metagenome	231	Y
F023293	Metagenome	210	Y
F057197	Metagenome / Metatranscriptome	136	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0194048_101193982	F023293	AGGGGG	MRYGILDDEGNVVRWVWHMPPYPHIVQKIKRQRKPKLDLSNVPEALF
Ga0194048_101193983	F019099	GGAGG	LIINGKIVKDWDKSQISTAYQRPNQFRVITWDMGRVQSWLLGKQPLARTLLEKVIR
Ga0194048_101193985	F057197	AGG	MTDFGAWRYENLVQFAKESTERMNLLNAEIEALNADLKAAINAYRDLLRRDSLGFLKATHPAEAEKTGE

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