NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10030678

Scaffold Ga0194048_10030678


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10030678 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2262
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfurellales → unclassified Desulfurellales → Desulfurellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036666Metagenome / Metatranscriptome169N
F039533Metagenome / Metatranscriptome163N

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100306781F039533GAGMSFKEPSRVWNVVSAMLEAEQPRSRNRARINATFNGNPPYSEEEARDNRIQTNVNFLEGTRIIHAARQQFTNAFLKPQNYFSVGLDTGPRDKRTEWGNIITKQLNRVMKRSPKYSTVLESQFAATVLHGIGPVTWLRDREWCPSARGTEDILVPTNTLTTMENMSHFAIYTSFTAADLIRMTRGENVDPGWNLKLVNELL
Ga0194048_100306782F036666N/AMLNQGYQAVARAVERVKNTAQGVRILAEWLGNGGIPVDRSAAQHRLDTCLHCLHNKPTKPDAIEKTVGEVIIEQEQLRHDMAMILQGESNAGTCEVCGCYLKLKVWVPLSYLGDRKMPDICWISQERKAI
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