NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10004813

Scaffold Ga0194048_10004813


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10004813 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6500
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (61.90%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001259Metagenome / Metatranscriptome735Y
F088293Metagenome109Y
F105027Metagenome / Metatranscriptome100N

Sequences

Protein IDFamilyRBSSequence
Ga0194048_100048133F088293AGGAGGVSVEQRILDLPAFADYNDRRQLRAIAMDVRKLEDRIKQLEEENDAMRADLLLWRESK
Ga0194048_100048134F001259GGAGGMRDCAFIYVHAWNGTIRVESLDTARNIDGNPEWKHVSTINPHVVLESILRASIKDRNQIIKHLLK
Ga0194048_100048139F105027GGAGGVSDIVHRKVTIVIEDAEGGFTLSMDCVPPIEDDGSQVRPTPALMAGSVARRAIEELVNRQTPEAPPEAAN
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