NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10001525

Scaffold Ga0194048_10001525


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10001525 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11505
Total Scaffold Genes34 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)30 (88.24%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000447Metagenome / Metatranscriptome1128Y
F000684Metagenome / Metatranscriptome938Y
F002515Metagenome / Metatranscriptome552Y
F006385Metagenome / Metatranscriptome374Y
F007691Metagenome / Metatranscriptome346Y
F011487Metagenome / Metatranscriptome290Y
F021288Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_1000152515F002515N/AMTKKTDEELRRLMELRRCNAATPIKSKKTYSRKGRKCQSEMLQLKQQQKGE
Ga0194048_1000152516F011487AGGAGMGNIADEFYDEYYATTCPSCRENAVDEFEDKCTHCLLEEMSATYNEDIALEMSLGLDY
Ga0194048_1000152518F000684AGGMTLQGYTYQIGDLFTTSKTGVTGRITDFSPLNAKLTRVSLRLANGAHRFAMVKTSK
Ga0194048_1000152523F007691N/AMTQTVNTIDDLINEIYKRNYSHLEFEENMGGEACDCQIHTTLNTIALYAGIEVGE
Ga0194048_1000152525F021288GGTGGMLGYTQRDLADMTYGVYQADLLINPDENPAIHNYLVTAHDFLQGLWAEGYFE
Ga0194048_100015256F006385GGAGMNLDTGTLVAILIALIGSVTMMGLFWKENIELTKQNRILYERIKTLQK
Ga0194048_100015258F000447AGGMGYIEIFRIDSEGAGWIDLAQANSDELFNLELGLLNEGALFTTKEAE
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