NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10000753

Scaffold Ga0194048_10000753


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10000753 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15849
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)23 (76.67%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000961Metagenome / Metatranscriptome820Y
F005737Metagenome391Y
F011282Metagenome292Y
F025214Metagenome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_1000075316F011282N/AMKKFKNIVVITGTYKTREGQEKKRYQTIGSVFLDDNENLKIKIDSIPIVDGGWAGWANCYDLEEKTNTGARDDIPF
Ga0194048_1000075322F005737AGGAMFEIKKYTKPTDWTAIAVYIVAIIAIVVVALDIFVWRP
Ga0194048_1000075329F025214GAGGMTTKLYLTKDGKAKNLALLTSTELLKIQETLRKTEAKEWIRRYRLKVKETGKQQAQAWWLGVKEAIKKKRGQDGLNTLIAEMQRQRHDDNSL
Ga0194048_100007538F000961N/AMEIDPVKYGVLWQKVQDYERRFDQMETKIDKLEFSIEKLVALANQGRGGFWMGMAIVSALSSAVGYISHWVGKN
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