NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194048_10000209

Scaffold Ga0194048_10000209


Overview

Basic Information
Taxon OID3300021519 Open in IMG/M
Scaffold IDGa0194048_10000209 Open in IMG/M
Source Dataset NameAnoxic zone freshwater microbial communities from boreal shield lake in IISD Experimental Lakes Area, Ontario, Canada - Jun2016-L222-5m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26803
Total Scaffold Genes48 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (77.08%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Anoxic Zone Freshwater → Anoxic Zone Freshwater Microbial Communities From Boreal Shield Lakes In Iisd Experimental Lakes Area, Ontario, Canada

Source Dataset Sampling Location
Location NameCanada: Ontario
CoordinatesLat. (o)49.697Long. (o)-93.722Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004789Metagenome / Metatranscriptome423Y
F007028Metagenome / Metatranscriptome359Y
F069735Metagenome123N
F090401Metagenome / Metatranscriptome108Y
F101035Metagenome / Metatranscriptome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0194048_1000020915F004789AGGAMTLPGTYENPTDKPCWTVCFSCSRCADKGRYTKCNKCSGRYDPLGKVDADHEDYCDCKNGNLRWKTQQGRLIMTKFTTNPFKGQVKYEKQSEDERDWDSYVNDMREKMDNPYFNPIVITE
Ga0194048_1000020924F069735AGAAGGMNLQSMQKLNDLLAEFIDPQIKEVIEAYASGNKNGDYFITIPDMDSIDLTLSELSSLVARSSNVYGRVARFAGMARAQYKLIEGRYKKVYKANRVGKNEAEREANALEAADSEYMALVTSEAIVNLAESMESAARISSESTRKLLDKAQSMQIASSRESKGYYSESDFSTY
Ga0194048_1000020928F007028GAGGMPKISKSAQEQSTDAPLDQAVSALAGEVTISTNPVFICGVNRKVNIGNFENVDVYAAISLPLSEMSLDDKEALSEAVKEAAAYGFGLVSRETGERYQLIKDTQQAK
Ga0194048_1000020932F101035AGAAGVDSAILVSLIAAIGAILAALVQKGRKENKDDHNVVASLLVNVKDDIIHLHKKIDHLDDQVDKVDDKIDVHLKSHRGK
Ga0194048_1000020946F090401AGGAGMARKYTGNTDGNSGKALEGTQKLLELCGKRWGFTNLGIWANRSMKNPKAVAGDPKWLSVHATGRAVDMGYTDRKKALEAWDWFLEHSAALGIEELHDYAFDANVKDKTLGWGRGFRCSRGEGVAGVKVYDANDNAGSQGGHWLHCELSPEMAKDAAKFEAAWRALPKPGA
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