NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10111720

Scaffold Ga0210410_10111720


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10111720 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2418
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001128Metagenome / Metatranscriptome769Y
F011788Metagenome / Metatranscriptome287Y
F025102Metagenome / Metatranscriptome203Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_101117202F001128AGGMRPTAKQASTAANWPPEKGQIITFRSLSGLSNGTVKEVRWGLVWRDFILDDGRVIPEHKILDHPEPPVWRKAEEVTQDEREAWERRLVSMAEAGLDPRDQEQSFWAELNQYLAYTYLRFKQAGSKPPDPE
Ga0210410_101117204F025102AGGAGMKRTAEIVLTALALAGMYCAIPKSSTPVQNPGIGTEQVVLVADGSDPMPLCRGRVCR
Ga0210410_101117206F011788N/ATVPIAVLTPRQLEVFLQSEFKRLAQEAGVKGARIHVERAIAADYEQVLREVAACLFSAKARTPRLGSEGLYK
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