| Basic Information | |
|---|---|
| Taxon OID | 3300021479 Open in IMG/M |
| Scaffold ID | Ga0210410_10000042 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 219910 |
| Total Scaffold Genes | 199 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 163 (81.91%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005765 | Metagenome / Metatranscriptome | 391 | Y |
| F032434 | Metagenome / Metatranscriptome | 180 | Y |
| F042546 | Metagenome / Metatranscriptome | 158 | Y |
| F049913 | Metagenome / Metatranscriptome | 146 | Y |
| F060020 | Metagenome | 133 | Y |
| F094987 | Metagenome | 105 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210410_10000042125 | F060020 | AGGA | MRSKSIHFTQASGAPMEMRREIRYRLDAPALFSWESSENERLQGEGITRDISVFGAFIVTPTCPPVDVPIQVEVVLPSLTGPRPVIRVSGEARVLRVDHSSKGQRENGFAVVSEDFSRWRMSTEQREPGSTFAETAVASGRNGHG |
| Ga0210410_1000004213 | F005765 | AGGAG | LKRVWMKFWLCASLLLAAQGHSGQVAAQKEVARARPNNAPGVNETLLAGLRPGRDTFAVAEKRFKLKNLAESHDSGIKEWRDECSGRSIRLEVDAKSMIQSITITTLGFQDGKCSEKRVDFLDPKNWVTGVGLRIGDPQDRIIDYYGEPNSSGPAAKNGQELELMAYQFDWAGPDVPQAMEVLCARDSGRVVEITLAFASL |
| Ga0210410_1000004243 | F094987 | AGG | MRPSDIPRKLLAVVALLALLAASTPAFADALSASNSLACCNTAYCPVHHRQSREMQKDKSNCDAHGNAGAADCSMRACDPAPDEAVGTTPFTLAAPITIFYEATAQAAPLSFSTFVPYVFSLPSTPPPRLLPS |
| Ga0210410_1000004249 | F042546 | GAG | MNFIFFRSGNFCLRQQQHASQCIAVVNIVLTLAIPLAIGLRAQIKTDPTIEFKKLAAQLSTSRLDGAAESEASQEKALGILDGFASSVLGSSTPPDLDAANRRMAELVSHVPPVGENYRLLRLGGSPAAYAMVVNFGLGGPAAVRIYSNATGRYALAARIDRFVEKDFFDSDIELIPVSTAEPVFVIVAGRTDDLATGMFSAWRFDGRRAAPLWSSDLLQQSSYEAGRDGFHLTYCSHTDEDHPAQCLRMTRDLYRLDASEWKRMGTEDLGAVKATPK |
| Ga0210410_1000004254 | F032434 | AGGAG | MTELTVILAIVIAFFAVVLWLQRSGRREQNPGPSPTEVLKMENVLPRHYRYFPQVRQALSASDGEYLDRVAPRDAAQTAHRERRAVARKFLAGLHEDFLNLERLARMIAALSPTISSQQETERLILGLKFRLLYARVWLRLSTGREPLEQLEQLTGLVGRLATRMEKAMTAVGALSAPGLNSTLSA |
| Ga0210410_1000004292 | F049913 | N/A | MSDSLIVQFVGYEVSPLEREYRFSVRESKTEAREFTLTIANAAFDCRRARFQDAPDICSLRLRRELAADGNHPANTHFQITDQELDDYRGRHSPKTSQSPYKKKVKEEY |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |