NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210398_10928259

Scaffold Ga0210398_10928259


Overview

Basic Information
Taxon OID3300021477 Open in IMG/M
Scaffold IDGa0210398_10928259 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)697
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019364Metagenome / Metatranscriptome230Y
F080348Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210398_109282591F080348N/ASSGRCAAGGKPVETIRAMLGDSVPNLTICAGNGAPCGTSSTTDLAREISGHDADVVPAQAVAAGLADAGALLHLILALSSEPRRGEALLLGTSGDGGFAALRLELA
Ga0210398_109282592F019364GGAGVNMNVRIAAAAYSVPDDGDTVEAVLEREKDRVEATLAPLSPKARQKAAEGLGLSRVRVCGGKQPYDLVLEAASTAIAEAGINAQDINLILDYSTFPGENSQYLPFAHKLSADLGAETSLNLSFKSG
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