NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0206685_10002967

Scaffold Ga0206685_10002967


Overview

Basic Information
Taxon OID3300021442 Open in IMG/M
Scaffold IDGa0206685_10002967 Open in IMG/M
Source Dataset NameAmmonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 200m 12015
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5176
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater → Marine Archaeal Communities From Monterey Bay, Ca, That Are Ammonia-Oxidizing

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.6907Long. (o)-122.3448Alt. (m)Depth (m)200
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002330Metagenome / Metatranscriptome570Y
F039829Metagenome / Metatranscriptome163Y
F050480Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0206685_1000296710F002330N/AMIIFDIMLKQIKQINKTLKIGQKFTIYYAPTYTKDGQDQTSIYDPHQYEVNVRSAIWTKDCKINRTGSLTYFDVEKNDYRTAIQTLQSIRIYINKTMYVWEEGK
Ga0206685_100029673F050480AGGAMEKEMNGHLYITNDNLKRIADAIEEILRLVKKDMEPRAKKRST
Ga0206685_100029678F039829AGAAGMSLKVKDVIRELKKFPNDFKVSLETYEVDNNNGGGYKKTNCIGVEKDEDAESFVVIR
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