NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_11060999

Scaffold Ga0210391_11060999


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_11060999 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)630
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000586Metagenome / Metatranscriptome1007Y
F044645Metagenome / Metatranscriptome154Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_110609991F044645N/ARKQEITLDLEAIKQALNLEKVVEGADLAINRFKLQVS
Ga0210391_110609992F000586N/AMNHADPNTMRARARQATEILKAQLLETGTVEPLVALYFEDHIEQVQFEDPSVLEHFDIRTERSFDYLRTMVGLRTPQAAMITLDVRMGPFENDEREIVAEKTAIFLMLDSPLLTIQIIVPYTRSGGRIAVSRVHYTEMPGDENAAPCPLFKIFPGAPVAVC

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