NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210391_10000262

Scaffold Ga0210391_10000262


Overview

Basic Information
Taxon OID3300021433 Open in IMG/M
Scaffold IDGa0210391_10000262 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)60318
Total Scaffold Genes60 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)38 (63.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000522Metagenome / Metatranscriptome1055Y
F000655Metagenome / Metatranscriptome958Y
F024745Metagenome / Metatranscriptome204Y

Sequences

Protein IDFamilyRBSSequence
Ga0210391_1000026212F000655N/AMIWWFLILGVSTLVVVCVAIAVYMRLRRHLREAQAAREGSSGEVSGHRPGRH
Ga0210391_1000026254F024745N/AMAGLGGAESFRFTSRKLVLDNEFAAGAPWVPSVPENQHLVAKYAGIYASELFVAYEMKKPHSWLPGDRIIRKFWWAYPAAMGAIHLKNAIGNVQTQGPGGCTSIECAEQMQMQ
Ga0210391_1000026256F000522GAGGMDHHEAVRKFEHLMLKEADHAREVATELEALVPILTTENSRQLAQLQIKASHKLSKEFRELAEKVKEK
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