NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210384_10146246

Scaffold Ga0210384_10146246


Overview

Basic Information
Taxon OID3300021432 Open in IMG/M
Scaffold IDGa0210384_10146246 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2121
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036810Metagenome169Y
F045709Metagenome / Metatranscriptome152Y
F070426Metagenome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210384_101462461F045709GGAGGVNLTPSQKGSFLAGIGLWVLIWASIWKADDIAQAMRIQRWFNSSRCIRWIGQHKSTSLLGTEVINYGTHGLDPLGVSFSLGGTLVNVFFIYLLLPCLEKLLRQKGTINATIQ
Ga0210384_101462462F070426GGAGGMLLELIVATEASVLSASWIRRSRMRRQQILMGGSTPEITLPFLDKYLKQQTTNPTRLQSFAAQKLAAVCRRAVHTQVFELLVLKLIQSASRRSRRDAEISRVEVIL
Ga0210384_101462463F036810AGGAGMSQPERTRVSRWTRLRSFAVGKYKAVQLSIERRSFESKLEKIVRNALAHQSVGLPAGHPQFKLLRQQADSTCTNFAHRWNITPDLLEAQIPAIRKLKSLANPSPKPEPAVLVSLGMAGVVALFFLVGILASLTSVGYHLIGGR
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