NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0193750_1000036

Scaffold Ga0193750_1000036


Overview

Basic Information
Taxon OID3300021413 Open in IMG/M
Scaffold IDGa0193750_1000036 Open in IMG/M
Source Dataset NameSoil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)73340
Total Scaffold Genes75 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)32 (42.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil And Sediment Microbial Communities From The East River, Co, Usa

Source Dataset Sampling Location
Location NameUSA: East River, Colorado
CoordinatesLat. (o)38.8924Long. (o)-106.9111Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000318Metagenome / Metatranscriptome1309Y
F000411Metagenome / Metatranscriptome1170Y
F000810Metagenome / Metatranscriptome882Y
F008758Metagenome / Metatranscriptome328Y
F026839Metagenome / Metatranscriptome196Y

Sequences

Protein IDFamilyRBSSequence
Ga0193750_100003619F000411GAGLSLERILGNLLLVNVRALQIFLLLTTAFFLPATLVRGELSTGTTHSISFVDLDGNKLSTADGHVTIVVLTTSADREQARIVGDHVPDFCLGNPAYKMITVIHFTRSHMAMGRRMATAFIRHRVGEAAKRLQARYDAQKISRDAKSDIFVVTDFDGTIASQLGQSAEATDFCVFVFGQTGELLAQWHSVPSADELAAALKKSD
Ga0193750_10000364F000318N/AMMPAQVTSGEQNPQFADAAALQKKAIQAQARIHANKDDRDQLMIAVKTNEVAMAKQVLLRNGFTAEDLENAKITLRTGGGKGGADELEISATCCDPKEITIQRSLEYFTK
Ga0193750_100003657F000810AGGMDPKKTRFARFGMLLRASAATCWRKRSLIATLSAMKSKHSFARNVLLMLVFGCAIFISTIARGGPPPRYLRSNHHFPPGLLTVDRTPNFGWNLGFNLLIDGRSVGSVAQGHSYSTWLPAGPHVLTVQRVPATGFTAPTSTTVNIQPGAEHLYTAMWDSDLVYLQPGGVWLTPGAYWQNHGDGAP
Ga0193750_100003661F026839AGGAMKIILMLILGLMLAGCESTENHVRNRDAVDRNRYLVEHNAVDTICACP
Ga0193750_100003662F008758N/AMRKAILLAGCGLLLGSTVIAGDFAADPLSFRNPQQDLFVNLSEMLRETKELQSCEKQQEAALRRFLEAGLSLNAATLMAHNQYPCD

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