NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210397_10000380

Scaffold Ga0210397_10000380


Overview

Basic Information
Taxon OID3300021403 Open in IMG/M
Scaffold IDGa0210397_10000380 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30242
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (67.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000670Metagenome / Metatranscriptome946Y
F001646Metagenome / Metatranscriptome658Y
F004141Metagenome / Metatranscriptome451Y

Sequences

Protein IDFamilyRBSSequence
Ga0210397_1000038013F001646AGGAGGMSDHIPAPGDADDYRGNEPDMSHTTEFAKMRAVMRASEKHREGGVDPEPEVTDADPDQDT
Ga0210397_1000038020F000670GAGVTTADLLALIESDHAKPGYDQFRTWVVAQAIRNALQTFHGCWGLDPDNPGSGEGFISDGQMRALNVTIRRAVHEALRHADMACNAMAPHRRILRAREQEAVDFCMFQLGTVRDYMEPPGSPELKEAYQRYVNDPDVSR
Ga0210397_1000038028F004141GGAMTMISESAMLSELAAEFPGYEFGTQPTWEGVSLIAVRQDGCDRPGVCVVITPDLDEMRCALLENTRLENERPWGGTPAR
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