| Basic Information | |
|---|---|
| Taxon OID | 3300021402 Open in IMG/M |
| Scaffold ID | Ga0210385_10000047 Open in IMG/M |
| Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 172074 |
| Total Scaffold Genes | 151 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 101 (66.89%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Massachusetts | |||||||
| Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000482 | Metagenome / Metatranscriptome | 1089 | Y |
| F001063 | Metagenome / Metatranscriptome | 789 | Y |
| F003185 | Metagenome / Metatranscriptome | 502 | Y |
| F006391 | Metagenome / Metatranscriptome | 374 | Y |
| F006517 | Metagenome / Metatranscriptome | 371 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0210385_10000047106 | F006517 | GGAG | MRPRVEYSISVPVPVDVAFQAFQNLERLLHRGIYNEAVWVAGEPWQVGSRLRYVIVKPVAAIVSSVVTSINPPRSVSLLNHALGITAEQNVTFGPDLTDGTRIRMSMNLIGTSTELSESEVHEAVTFITYDALDTLVALCQRRASPSEPPE |
| Ga0210385_10000047132 | F001063 | GGAG | METMLQGLVIIGGLTFSLATSLLIEELIFGQIVRTAFARRPETPQPTSVNKRH |
| Ga0210385_1000004731 | F000482 | N/A | MQVSRAHLAIAIGSAGLLVLVFLGYLYWLTTQPPVLSRSVERDPLTNMPISITMNPFRDRTIERIANRFISEMRDGNCRQLLAQWEKDYRRKRADFVCESETQHPLISWNLIEWEDAPPLIILHYKGQRYSSPAQDATYKDLFSVTEEKKDEGWTVTKYDAFY |
| Ga0210385_1000004744 | F006391 | GGAG | VNDKVNDKANDKAGNGKSKFDWVTERSSCSLPKVFNTLRLEVAEDVKTRNALRPNNSPYEFSIAEKGEDFTILLKTKDAHKSVTFSLAQHGIVVRDDNGDPMFEVTPTFSDEGKCRLNVNGQERETWQVRRMALEELMFQGN |
| Ga0210385_1000004780 | F003185 | GGA | MKTRLRWSSAITTSILLMVSLALAQETPKPETSASVTIVTAGDISVTRAEDGKTAVSINFVPGKTKSGDTRITISGPYSLDVNGGVKEVTGPQGVELHVLSHEELRFEAPEIAEWERSHKFSQNSACMKIPKFPGCGNPTCDRPDHPDDQCRYNSASGCSCVSASGAPCSEARRTTGRST |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |