NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0194130_10217186

Scaffold Ga0194130_10217186


Overview

Basic Information
Taxon OID3300021376 Open in IMG/M
Scaffold IDGa0194130_10217186 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Tanganyika, Tanzania - TA2015050 Kigoma 12 surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1116
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Lake Tanganyika, Tanzania

Source Dataset Sampling Location
Location NameTanzania: Lake Tanganyika
CoordinatesLat. (o)-4.8369Long. (o)29.6087Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005177Metagenome / Metatranscriptome409Y
F021481Metagenome / Metatranscriptome218Y
F048990Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0194130_102171862F021481AGGAMSPILDVKRGRFYRKGDVFTTGKSGITGTIQEIVAIRPNLTKLRLDTGAGLRYAMVKIGR
Ga0194130_102171863F005177AGGAMKNRYRVEIFDEVKANDLTLYSEQGVDKEYLTELVFSNLRRFSGNVRAYVYDQLKKKKTTALYLPMEILPKKTELTKLLG
Ga0194130_102171864F048990AGGAMAHNLETDGNDVAFAIRGTPAWHNLANRIFSQDEDVNTQTMLDEAKLSNWNVRLSPITEYINPDWNDVSDSHLVLR
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