NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10057705

Scaffold Ga0213869_10057705


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10057705 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1996
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045787Metagenome / Metatranscriptome152N
F048349Metagenome / Metatranscriptome148N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100577052F045787AGGAGMQKLLIKLLDMMGITAGDAVVIESVDYFLWKIDLPLGKISADTYEGVHWGDSKILDTDAWLTFTVGNLYSANEFSFGEGIVNINYADDNEGLAYTGELEDVITARIKDLYNLSADGSEQGMQGDDYISLDLWIDGLCDNGEDEFTPEQMDADFDDSESENYLKQFCRHSAVLAS
Ga0213869_100577053F048349GGAGMQKKLISNREMFRQLLARDILAILEQFNGGACMRLIDIKAQLQGMSACRHYMNLHTSNGHGYLSFNDRFFRAIQSINDSGYGISIRKHTNGQLWAFSTNTLKQDNWQNFLAECFTKWTANYNMNRGYILNAQRDEAVA
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