NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10018716

Scaffold Ga0213869_10018716


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10018716 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3952
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001942Metagenome / Metatranscriptome613Y
F007417Metagenome351Y
F008595Metagenome / Metatranscriptome331Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100187162F008595AGGAGMSKEENKMENQEPVIITFNGTEYRAADLNEEQMALAAKLNIAGKKLARLQEYYDDYVITDEYKNLCIQSFDRAINNEEVEVVEEE
Ga0213869_100187166F001942N/AMPRKTSDQHQNNSRLGALGESLVQTFLLEYADFCFPTQEKHPADLMVEFGSAKYTVQVKSRRATKEKKFVFAAENSRSMSDTYRNYNCDLLAFVFFYDDQKRIMFKSNTSSQNYFTFDKKVITDTMELDSLQESLDTLSSVPVLNPII
Ga0213869_100187168F007417AGGAGMRYTLQVQLPSLGWVVAIKTSDLFYMASKRARLIKEGHKVKLTKEKK
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Institute for Fundamental Biomedical Research
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