NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10008563

Scaffold Ga0213869_10008563


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10008563 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6256
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (16.67%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006200Metagenome / Metatranscriptome379Y
F013232Metagenome / Metatranscriptome273Y
F015402Metagenome / Metatranscriptome255Y
F016004Metagenome / Metatranscriptome250Y
F070147Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_100085635F013232N/AMSDREISNSKSGVPMWWKPGISFLKEEWINHPHLKQFRNKKSTDRKCDCESPKLVNLWEHDSCVRGRIDTDVCVKCNEVESFSIIR
Ga0213869_100085636F070147N/AMKDVILLILEAVLIDFKRRCEQNSDEGSRDTYGKWHGQIKTMIDTIKNGGVK
Ga0213869_100085637F016004GGTGGMNEELLKILETLKEDFEMLQDGRWDLNYSDGSEIQASLDNVEKAINIIKNNE
Ga0213869_100085638F006200GAGMSDWMERLVKKYSVPTNDTTDKRGMLNETQLNNLRNGKDKKTT
Ga0213869_100085639F015402N/AMGKIKKLLDFQFDFELNQEDIDEELMTRNDYDYQYEKWLKSKEFVEYVNGELDSTRPRYSEHDIMSATRYASEYITIEPSEVGKKVYDMLFSEKIEEYLTCKTDVWTTKNT
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Institute for Fundamental Biomedical Research
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