NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10005741

Scaffold Ga0213869_10005741


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10005741 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7837
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Legionellales → unclassified Legionellales → Legionellales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029566Metagenome188N
F048571Metagenome148N
F052884Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000574111F029566AGGAGMAHSVEQLYEKVAVLHTKAIELHRERYKTQGFYDKAKCTFLLADVRSLAREIERGLVDLDIEFSKSSIDS
Ga0213869_100057412F048571AGGMEKSEYIHLLATSPWKEMQNHFDSIPVIDVKSTTKLDINTSDWVRFSIDNFDLATQKWEEPKSHYTSQANKWATINNIVGRNIHNSFELNYGMLGDGNDKLKTILGRNNIKLLGIDWDTVLVRLLVKFPGHGMAWHEDSLDSYVLKFDLSDTSKVKRYWFSIDDWQDGHVFQVSKTVLSNWKKGEAFDLPFGIGHASSNFGYRPMYSVSFTGVLDS
Ga0213869_100057418F052884N/AMNNILCLGASGYLGSYLTDRFKCVTTAKRFQWSADVWRYDLAHQYDFVFLLARTCRKQYPRRDRLTMMDEVGGVVKILTAHPRSHIVFTSTKCVYGIANEEERPMTREDIGDYFERVLNGEFVNKTIDLPRRDDGMHVSLINALSDHHRIYADTKICDELLIKNCAHRHTIMRIWDII
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