NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10003188

Scaffold Ga0213869_10003188


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10003188 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11006
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010726Metagenome / Metatranscriptome300Y
F020179Metagenome / Metatranscriptome225Y
F078751Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000318811F078751GAGGMKDRIKELAIESRGSSGYGKPFPWRRFAELIIQECAEVASRADDVNEDYSAWYLIEKHFEIRSK
Ga0213869_1000318813F020179GAGGMKKKIKYFGLGVLYLIISPIYFPVMILWEEREQIKDFYSQCFKAITFKDIK
Ga0213869_1000318816F010726N/AVVKQLVFALIVSVNGEIDAKAKSYWEDLDRCRWFAEELTIQGTRRKYHTPVLAYCVPEYVNPEITLIHT
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