NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000534

Scaffold Ga0213869_10000534


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000534 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30876
Total Scaffold Genes37 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (8.11%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004866Metagenome420Y
F006666Metagenome / Metatranscriptome367Y
F020206Metagenome / Metatranscriptome225Y
F030805Metagenome / Metatranscriptome184Y
F055007Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000053414F020206N/AMALDIKKQNKTYEFSNSSVSKIIASKAIALDIIDRDYLDNAAAVAAGLSKGDLYHNAGDLKVVVN
Ga0213869_1000053424F006666N/AMNPKSHKDIKEGIADEVGVHSSVVDEFITFYYSKLRKKLSNLDYPRIHVDGLGTFYLRKNKLENAIKKNKSILGNLAKRTYVGFAKSQEINTNLEQMESALKQMEKDILNKKEFNNGK
Ga0213869_1000053425F004866GAGMAIVNKVDLKMKVDIDLSIQYQIITYCFFNDISIGNSDLKFLAELSKNKNIELTKFCLKLVEDKIFKSPQSARNAISKAERKKLVVKKGNNKKTISLEKNINVQIEGLVLLDYKILGYESKKS
Ga0213869_1000053434F030805N/AMDKKIVGLAGTLLLGVAGWLVTSVYSIQVDTQIIKEKIEKVYADNCPYCVHAAHSSIAEHPLLAPTIKHAHQHVGKEIVKVNE
Ga0213869_100005349F055007N/AMANCAHCNKVFTCGCQKASLGNGVIVCKQCKAKAEANVSTSRDLNLELARQQIQDLKNR
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