NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0213869_10000344

Scaffold Ga0213869_10000344


Overview

Basic Information
Taxon OID3300021375 Open in IMG/M
Scaffold IDGa0213869_10000344 Open in IMG/M
Source Dataset NameCoastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO132
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)38523
Total Scaffold Genes63 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (14.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Coastal Seawater Microbial Communities From Pivers Island, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)34.7181Long. (o)-76.6707Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004631Metagenome / Metatranscriptome430Y
F035779Metagenome / Metatranscriptome171Y
F080527Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0213869_1000034422F004631N/AMKHVKTYESYLNEVNRKGKPYHGSKIIVFDLDDTLVITDAKIKVCDKKSGECFSLTPEEFNEYESNPDHELDFDDFKSLEIMKAGKMIDYYLKIFKEAYKMKLAVGIVTARDDQKMIYRWLREHVGFKIDKDLIFAVNDPVHKFKGGISDRKKAAFIELMELGYTDFQFYDDDTANLKLVKSLESEYEGISISTIKARK
Ga0213869_1000034455F080527N/AMDLNQREESGPKPIVVYYLHYYDELYLERAFNKFQDFAICVMAESTKEAIEKAKVIAQNPNIKIMGIANGRESWVNEKAPMGTGEETMPLGGWDRSWRNNAKKS
Ga0213869_100003448F035779N/AMSFADFLNEKNFQVVTSDHVIKYRLSYQYGRGGFLALASSSKENDKEIEIGDKFEIGKAIEDSINAELKKRKQLFTVEEDHGYQGAGYAFYLVMDEVIKLLNK
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